RnoEX0019014 @ rn6
Exon Skipping
Gene
ENSRNOG00000009675 | Cdc42bpb
Description
CDC42 binding protein kinase beta [Source:RGD Symbol;Acc:621753]
Coordinates
chr6:135762897-135766058:-
Coord C1 exon
chr6:135765979-135766058
Coord A exon
chr6:135764001-135764051
Coord C2 exon
chr6:135762897-135762986
Length
51 bp
Sequences
Splice sites
3' ss Seq
CTCCTGTCTGTTACACCAAGGAC
3' ss Score
3.68
5' ss Seq
GACGTAAGT
5' ss Score
10.93
Exon sequences
Seq C1 exon
GGCTCAAACTTCCAGATTTCCAGGATCCTATCTTTGAGTACTTCAACACTGCTCCTCTTGCACATGACCTGACTTTTAGA
Seq A exon
GACTCGCTCTCCTCCTCATCTGCATCTTCTCTGCTAGCCTTGTGGGAGGAC
Seq C2 exon
ACTAGCTCAGCTAGTGATCAGGAAACACAGGCTTCAAAGTTGGACTTGTCCCCATCAGTGTCTGTGGCCACAAGCACAGAACAGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009675_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.093 A=0.000 C2=0.900
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000080623fB2731
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTTCAACACTGCTCCTCTTGC
R:
CTCCTGCTGTTCTGTGCTTGT
Band lengths:
132-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]