HsaEX0003524 @ hg38
Exon Skipping
Gene
ENSG00000198752 | CDC42BPB
Description
CDC42 binding protein kinase beta [Source:HGNC Symbol;Acc:HGNC:1738]
Coordinates
chr14:102954602-102959710:-
Coord C1 exon
chr14:102959631-102959710
Coord A exon
chr14:102956240-102956290
Coord C2 exon
chr14:102954602-102954688
Length
51 bp
Sequences
Splice sites
3' ss Seq
TCCTGTCTGTTACCTCCAAGGAC
3' ss Score
6.62
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GGCTCAAACTTCCAGATTTTCAGGATTCCATTTTTGAGTATTTCAACACTGCTCCTCTTGCACATGACCTGACATTTAGA
Seq A exon
GACTCTCTCTCCTCCTCGTCTGCATCTTCCCTGCTAGCCTTTTGGGAAGAA
Seq C2 exon
ACCAGCTCAGCTAGTGAGCAAGAAACACAAGCTCCGAAGCCAGAAGCGTCCCCGTCGATGTCTGTGGCTGCATCAGAGCAGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198752_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.093 A=0.000 C2=0.983
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCCAGATTTTCAGGATTCCA
R:
GATGCAGCCACAGACATCGAC
Band lengths:
147-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development