GgaEX0017218 @ galGal3
Exon Skipping
Gene
ENSGALG00000011432 | CDC42BPB
Description
NA
Coordinates
chr5:52437153-52439945:-
Coord C1 exon
chr5:52439866-52439945
Coord A exon
chr5:52438413-52438463
Coord C2 exon
chr5:52437153-52437242
Length
51 bp
Sequences
Splice sites
3' ss Seq
TCATATCTGTTACAACAAAGGAT
3' ss Score
2.48
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GTCTCAAACTTCCAGACTTTCAGGATTCCATTTTTGAATATTTCAACACCTCTCCTCTTGCACGTGATCTGACCTTCAGA
Seq A exon
GATTCTGTTTCTTCTTCGTCTACATCTTCTCTGCTAGCCTTTTGGGAAGAA
Seq C2 exon
ACTGGCTCCATTAGTGAGCAGGAAACACAGGGTCCCAAATCAGAAGTTTCGCCATCTACTTCAGTTGTAACTGCAGAGCAACCACAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011432-'20-25,'20-24,21-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.074 A=0.000 C2=0.956
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTTCAACACCTCTCCTCTTGCAC
R:
TTCTTGTGGTTGCTCTGCAGT
Band lengths:
132-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]