DreEX0020198 @ danRer10
Exon Skipping
Gene
ENSDARG00000019383 | cdc42bpb
Description
CDC42 binding protein kinase beta (DMPK-like) [Source:ZFIN;Acc:ZDB-GENE-030131-3647]
Coordinates
chr20:18525700-18532007:-
Coord C1 exon
chr20:18531928-18532007
Coord A exon
chr20:18528555-18528605
Coord C2 exon
chr20:18525700-18525783
Length
51 bp
Sequences
Splice sites
3' ss Seq
TGTCCCCCTCAACAAAAAAGGAC
3' ss Score
2.37
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GCCTGAAACTGCCAGACTTCCAGGACTCCATCTTTGACTACTTCAATACCTCTCCTCTTGCCCATGAGCTGACATTCAGA
Seq A exon
GACTCTGTCTCCTCCTCATCTGCATCTTCTCTGCTTGCATTTTGGGACGAA
Seq C2 exon
ACCAGCTCTGTCGGAGATGTGGACGTCGCACCTCAGAAGACTGACATTCCCCCTTCCTCCCCATCAGCAGCTACAGAACAGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019383_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.123 A=0.000 C2=0.869
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000049437fB1803
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTGCCAGACTTCCAGGACT
R:
GGAGGAAGGGGGAATGTCAGT
Band lengths:
134-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]