MmuALTA0004160-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000029516 | Cit
Description
citron [Source:MGI Symbol;Acc:MGI:105313]
Coordinates
chr5:115845280-115846466:+
Coord C1 exon
chr5:115845280-115845301
Coord A exon
NA
Coord C2 exon
chr5:115846347-115846466
Length
0 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGC
5' ss Score
6.12
3' ss Seq
ACCCGCTTGACTTTCCCCAGTGT
3' ss Score
7
Exon sequences
Seq C1 exon
GGCGGAGCGGAGCGGGGCGAAT
Seq A exon
NA
Seq C2 exon
TGTTCCTTCGGCGTTGGCGGAGAGATGTTGAAGTTCAAGTATGGTGTGCGGAACCCGCCGGAGGCCAGTGCCTCCGAGCCCATTGCCAGTCGGGCCTCCAGGCTAAATCTCTTCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029516-0-2,0-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.156
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF041927=Utp21=PU(8.2=25.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types