MmuALTA0004160-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000029516 | Cit
Description
citron [Source:MGI Symbol;Acc:MGI:105313]
Coordinates
chr5:116295289-116296475:+
Coord C1 exon
chr5:116295289-116295310
Coord A exon
chr5:116296293-116296355
Coord C2 exon
chr5:116296356-116296475
Length
63 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGC
5' ss Score
6.12
3' ss Seq
CCTCATCCTGATCTCTTTAGGGA
3' ss Score
8.49
Exon sequences
Seq C1 exon
GGCGGAGCGGAGCGGGGCGAAT
Seq A exon
GGAGACACGACTCTGCCAAGCCCTTCCTGCCTTCAATGTCAGTACCCGCTTGACTTTCCCCAG
Seq C2 exon
TGTTCCTTCGGCGTTGGCGGAGAGATGTTGAAGTTCAAGTATGGTGTGCGGAACCCGCCGGAGGCCAGTGCCTCCGAGCCCATTGCCAGTCGGGCCTCCAGGCTAAATCTCTTCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029516-0-2,0-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.156
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF041927=Utp21=PU(8.2=25.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: