MmuALTA0004783-1/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000006932 | Ctnnb1
Description
catenin (cadherin associated protein), beta 1 [Source:MGI Symbol;Acc:MGI:88276]
Coordinates
chr9:120868547-120869162:+
Coord C1 exon
chr9:120868547-120868647
Coord A exon
NA
Coord C2 exon
chr9:120869062-120869162
Length
0 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
TCTGGTCCTTTTTGGTCGAGGAG
3' ss Score
3.62
Exon sequences
Seq C1 exon
TGCCTGATCTGGGACACGCCCAGGACCTCATGGATGGGCTGCCCCCAGGTGATAGCAATCAGCTGGCCTGGTTTGATACTGACCTGTAAATCGTCCTTTAG
Seq A exon
NA
Seq C2 exon
GAGTAACAATACAAATGGATTTGGGGAGTGACTCACGCAGTGAAGAATGCACACGAATGGATCACAAGATGGCGTTATCAAACCCTAGCCTTGCTTGTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006932-35-36,35-35-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTGATCTGGGACACGC
R:
AGAACAAGCAAGGCTAGGGTT
Band lengths:
202-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: