MmuALTA0005399-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000040479 | Dgkz
Description
diacylglycerol kinase zeta [Source:MGI Symbol;Acc:MGI:1278339]
Coordinates
chr2:91780915-91781193:-
Coord C1 exon
chr2:91781122-91781193
Coord A exon
chr2:91781032-91781054
Coord C2 exon
chr2:91780915-91781031
Length
23 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
3' ss Seq
ATTATCCTGACCCAGCTCAGCCT
3' ss Score
-1.98
Exon sequences
Seq C1 exon
GGCTTCCAGCAGAAGTTCACCTTCCACAGCAAGGAGATCGTAGCCATCAGCTGCTCCTGGTGCAAACAGGCA
Seq A exon
CCTTGCCCCTGGCTGTCTTCCAG
Seq C2 exon
TACCACAGCAAGGTGTCGTGCTTCATGATGCAACAGATTGAGGAACCCTGCTCCCTAGGGGTGCATGCAGCCGTGGTCATCCCACCCACCTGGATCCTGCGGGCCCGGAGGCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040479-15-18,15-17-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.051
Domain overlap (PFAM):
C1:
PF0013017=C1_1=FE(38.3=100)
A:
NA
C2:
PF0013017=C1_1=PD(28.3=43.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCTTCCACAGCAAGGAGA
R:
CTAGGGAGCAGGGTTCCTCAA
Band lengths:
114-137
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: