MmuALTA0005399-1/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000040479 | Dgkz
Description
diacylglycerol kinase zeta [Source:MGI Symbol;Acc:MGI:1278339]
Coordinates
chr2:91780915-91781193:-
Coord C1 exon
chr2:91781122-91781193
Coord A exon
NA
Coord C2 exon
chr2:91780915-91781031
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
3' ss Seq
TGCCCCTGGCTGTCTTCCAGTAC
3' ss Score
7.58
Exon sequences
Seq C1 exon
GGCTTCCAGCAGAAGTTCACCTTCCACAGCAAGGAGATCGTAGCCATCAGCTGCTCCTGGTGCAAACAGGCA
Seq A exon
NA
Seq C2 exon
TACCACAGCAAGGTGTCGTGCTTCATGATGCAACAGATTGAGGAACCCTGCTCCCTAGGGGTGCATGCAGCCGTGGTCATCCCACCCACCTGGATCCTGCGGGCCCGGAGGCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040479-15-18,15-17-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.051
Domain overlap (PFAM):
C1:
PF0013017=C1_1=FE(38.3=100)
A:
NA
C2:
PF0013017=C1_1=PD(28.3=43.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCTTCCACAGCAAGGAGA
R:
CTAGGGAGCAGGGTTCCTCAA
Band lengths:
114-137
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: