BtaALTA0009153-4/4 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000013636 | DGKZ
Description
diacylglycerol kinase, zeta [Source:HGNC Symbol;Acc:HGNC:2857]
Coordinates
chr15:77240836-77241139:+
Coord C1 exon
chr15:77240836-77240907
Coord A exon
chr15:77241023-77241058
Coord C2 exon
chr15:77241059-77241139
Length
36 bp
Sequences
Splice sites
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
3' ss Seq
CCCCACCCCACCCCCTCCAGTAC
3' ss Score
5.78
Exon sequences
Seq C1 exon
GGCTTCCAGCAGAAGTTCACCTTCCACAGCAAGGAGATCGTGGCCATCAGCTGCTCCTGGTGCAAGCAAGCA
Seq A exon
TACCACAGCAAGGTGTCCTGCTTCATGCTGCAGCAG
Seq C2 exon
ATCGAGGAGCCGTGCTCCCTGGGGGTCCACGCCGCTGTGGTCATCCCCCCCACCTGGATCCTCCGGGCCCGCAGGCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013636-19-16,19-15,19-14,19-13-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.051
Domain overlap (PFAM):
C1:
PF0013017=C1_1=FE(38.3=100)
A:
NA
C2:
PF0013017=C1_1=PD(28.3=43.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCTTCCACAGCAAGGAGA
R:
CGGAGGATCCAGGTGGGG
Band lengths:
121-157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development