MmuALTA0005399-3/4 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000040479 | Dgkz
Description
diacylglycerol kinase zeta [Source:MGI Symbol;Acc:MGI:1278339]
Coordinates
chr2:91940758-91941036:-
Coord C1 exon
chr2:91940965-91941036
Coord A exon
chr2:91940839-91940874
Coord C2 exon
chr2:91940758-91940838
Length
36 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
3' ss Seq
TGCCCCTGGCTGTCTTCCAGTAC
3' ss Score
7.58
Exon sequences
Seq C1 exon
GGCTTCCAGCAGAAGTTCACCTTCCACAGCAAGGAGATCGTAGCCATCAGCTGCTCCTGGTGCAAACAGGCA
Seq A exon
TACCACAGCAAGGTGTCGTGCTTCATGATGCAACAG
Seq C2 exon
ATTGAGGAACCCTGCTCCCTAGGGGTGCATGCAGCCGTGGTCATCCCACCCACCTGGATCCTGCGGGCCCGGAGGCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040479-22-41,22-40,22-39,22-38-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.051
Domain overlap (PFAM):
C1:
PF0013017=C1_1=FE(38.3=100)
A:
NA
C2:
PF0013017=C1_1=PD(28.3=43.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCTTCCACAGCAAGGAGA
R:
GATCCAGGTGGGTGGGATGA
Band lengths:
116-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types