DreALTA0009704-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000076025 | dgkzb
Description
diacylglycerol kinase, zeta b [Source:ZFIN;Acc:ZDB-GENE-111104-4]
Coordinates
chr25:7701613-7701904:+
Coord C1 exon
chr25:7701613-7701684
Coord A exon
chr25:7701788-7701820
Coord C2 exon
chr25:7701821-7701904
Length
33 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
3' ss Seq
ATTTGCCATGTGTCCTACAGTAT
3' ss Score
7.28
Exon sequences
Seq C1 exon
GGTTTCCAGCAGAAATTCTCCTTCCACAGTAAAGACATTGTGGCCATCAGTTGCTCATGGTGTAAACAGGCT
Seq A exon
TATCACAACAAGGTGAACTGTTTCATGATGCAG
Seq C2 exon
AGAATCGATGAGCCGTGTTCCCTTGGCGCTCACGCAGCTGTGATCATCCCTCCAACCTGGATTATCAGAATGCGGAGGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076025-7-10,7-9-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.051
Domain overlap (PFAM):
C1:
PF0013017=C1_1=FE(38.3=100)
A:
NA
C2:
PF0013017=C1_1=PD(28.3=43.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTGTGGCCATCAGTTGCT
R:
GCTGCCTCCGCATTCTGATAA
Band lengths:
120-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]