MmuALTA0005609-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000005237 | Dnah2
Description
dynein, axonemal, heavy chain 2 [Source:MGI Symbol;Acc:MGI:107731]
Coordinates
chr11:69446575-69447937:-
Coord C1 exon
chr11:69447796-69447937
Coord A exon
chr11:69446745-69446946
Coord C2 exon
chr11:69446575-69446744
Length
202 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
3' ss Seq
ATGTAACTGATTTTGTTAAGGGA
3' ss Score
3.3
Exon sequences
Seq C1 exon
GCCCTAGAGTCTCTGAACAAGAAGGACATAGGTGAGATCAAGTCCTACGGACGACCCCCTGCGCAGGTGGAAATTGTAATGCAGGCAGTCATGATTCTTCGAGGCAATGAGCCCACGTGGGCAGAAGCAAAGCGACAGTTAG
Seq A exon
GGACTAGGAGACCAGGCTGGGGAGACTGAGGAGGCCTTGGGGGCTGAGAGGACACCAGAGGAAGGAGCAAGATTATAAGGGGTCAAATGTCTTGGCCTTGGGAACTGAGAAGCGATGAGGAGCTGTGGTAAAGCTGAACGAGGAGACCACGATCCTCCTCGATCCATCCGGCTGTTTGGCTGAGGCCTCAAAATGTCCTCAG
Seq C2 exon
GGGAGCAGAACTTCATCAAGTCATTGATCAACTTTGATAAAGACAACATCTCAGATAAGGTATTGAAGAAGATCGGGGCCTACTGCGCCCAGCCCGACTTCCAGCCTGATATCATTGGCAGAGTCTCCCTGGCTGCTAAGTCCCTCTGCATGTGGGTGCGGGCCATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005237-87-85,87-84-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(13.9=100)
A:
NA
C2:
PF127772=MT=FE(16.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTAGAGTCTCTGAACAAGA
R:
CCACATGCAGAGGGACTTAGC
Band lengths:
297-499
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types