Special

MmuALTA0005609-2/2 @ mm9

Alternative 3'ss

Gene
ENSMUSG00000005237 | Dnahc2
Description
dynein, axonemal, heavy chain 2 [Source:MGI Symbol;Acc:MGI:107731]
Coordinates
chr11:69260077-69261439:-
Coord C1 exon
chr11:69261298-69261439
Coord A exon
chr11:69260247-69260448
Coord C2 exon
chr11:69260077-69260246
Length
202 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
3' ss Seq
ATGTAACTGATTTTGTTAAGGGA
3' ss Score
3.3
Exon sequences
Seq C1 exon
GCCCTAGAGTCTCTGAACAAGAAGGACATAGGTGAGATCAAGTCCTACGGACGACCCCCTGCGCAGGTGGAAATTGTAATGCAGGCAGTCATGATTCTTCGAGGCAATGAGCCCACGTGGGCAGAAGCAAAGCGACAGTTAG
Seq A exon
GGACTAGGAGACCAGGCTGGGGAGACTGAGGAGGCCTTGGGGGCTGAGAGGACACCAGAGGAAGGAGCAAGATTATAAGGGGTCAAATGTCTTGGCCTTGGGAACTGAGAAGCGATGAGGAGCTGTGGTAAAGCTGAACGAGGAGACCACGATCCTCCTCGATCCATCCGGCTGTTTGGCTGAGGCCTCAAAATGTCCTCAG
Seq C2 exon
GGGAGCAGAACTTCATCAAGTCATTGATCAACTTTGATAAAGACAACATCTCAGATAAGGTATTGAAGAAGATCGGGGCCTACTGCGCCCAGCCCGACTTCCAGCCTGATATCATTGGCAGAGTCTCCCTGGCTGCTAAGTCCCTCTGCATGTGGGTGCGGGCCATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005237-73-68,73-67-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact





	

	
ORF disruption when splice site is used (sequence inclusion)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF127772=MT=FE(13.9=100)

							
A:
NA

							
C2:
PF127772=MT=FE(16.6=100)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000104299





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000047329, ENSMUSP00000104299f218A
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr17:7710242-7710243 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr19:28107737-28107738 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GCCCTAGAGTCTCTGAACAAGA

				
R: 
CCACATGCAGAGGGACTTAGC

				
Band lengths: 
297-499

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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