MmuALTA0005610-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000056752 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:66156820-66160053:-
Coord C1 exon
chr11:66159857-66160053
Coord A exon
chr11:66156974-66156978
Coord C2 exon
chr11:66156820-66156973
Length
5 bp
Sequences
Splice sites
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
3' ss Seq
ATTTCTCTTGTCTTTTGTAGCTC
3' ss Score
10.78
Exon sequences
Seq C1 exon
GTCATTATTCCTGTCCTGGCAAATGAAAAGAACCATTTAGAATGGCCCCACATGGTATGTCAAGACATCAGACATCATGCCCACACCCTGAAGTCTGACCTCCTAGTGATCTTTGAGCACATGAAGGGGAGAACCTTGCTGCCTCTTCCAGTTGGCTCAGAAAAACTGGAGTTTGTGGATGGCCACAGTGAGCCAGT
Seq A exon
CTCAG
Seq C2 exon
ATGCCATAGACAAGTCAACTCTCTATGCTGTGGAGTCTGCAGTGATCAAATGGAGCCACCAAGTCCAGGTGGTACTCAAGAGGGAGTCTTCTCAGGCACTCATACAAGGACAAAATCCCACCCCCAAGGTGGAGCTGGAGTTCTGGAAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752-1-4,1-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.016
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF083857=DHC_N1=PU(10.7=92.3)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTGGAGTTTGTGGATGGCC
R:
TGGACTTGGTGGCTCCATTTG
Band lengths:
101-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types