MmuEX0015106 @ mm10
Exon Skipping
Gene
ENSMUSG00000056752 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:66156820-66168533:-
Coord C1 exon
chr11:66168057-66168533
Coord A exon
chr11:66159857-66160053
Coord C2 exon
chr11:66156820-66156978
Length
197 bp
Sequences
Splice sites
3' ss Seq
TTGGTCTCTCTCTCTTTCAGGTC
3' ss Score
14.34
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
AGCAGAGGCAGGAGGGCCTGGCATCCCCGTCGCTAGGGAAACAGACGCTGCAGCTGGCAACACGCGATGCCCGGCGCCAAGGAGCAGGCAGCGCTGGCGGAGTCTGGGGACGAGGAGCCTGGAGACCCGAGGCTGCGGCTTCTGGGGACTTTTGTGGCTCGGAGCCTGCGTCCGGCCGCGGGCACCTGGGAGCGCTGTGCAGGCACAGCCGAGGCGGGGAGGCTGCTGCAGGCCTTCCTGGATCACAACGCTGCCTCGGATCCGCGGCCACTGCTGGTGGTTCAGTCCGGGCCCGGGGGCCTGGTGGTGACACCCGGTCTAGACGCAGGACCAGAGCCCAGCCGAGCTCGCGCCAAGGGGCTCTTTTTCTTGCGCACTAAGTCCGAGCCTCCGGGAAATCACAGCCTCCGCGGCACGGTGCTCTGCGGGGACCTACCCGCGGTGCCACTGGAGCACCTGGCCCCGCTGCTCTCAGAG
Seq A exon
GTCATTATTCCTGTCCTGGCAAATGAAAAGAACCATTTAGAATGGCCCCACATGGTATGTCAAGACATCAGACATCATGCCCACACCCTGAAGTCTGACCTCCTAGTGATCTTTGAGCACATGAAGGGGAGAACCTTGCTGCCTCTTCCAGTTGGCTCAGAAAAACTGGAGTTTGTGGATGGCCACAGTGAGCCAGT
Seq C2 exon
CTCAGATGCCATAGACAAGTCAACTCTCTATGCTGTGGAGTCTGCAGTGATCAAATGGAGCCACCAAGTCCAGGTGGTACTCAAGAGGGAGTCTTCTCAGGCACTCATACAAGGACAAAATCCCACCCCCAAGGTGGAGCTGGAGTTCTGGAAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.358 A=0.000 C2=0.017
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF083857=DHC_N1=PU(10.9=88.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTTGCGCACTAAGTCCGAG
R:
CCTTGGGGGTGGGATTTTGTC
Band lengths:
245-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types