GgaEX6015801 @ galGal3
Exon Skipping
Gene
ENSGALG00000001111 | DNAH9
Description
NA
Coordinates
chr18:1009885-1015995:+
Coord C1 exon
chr18:1009885-1010001
Coord A exon
chr18:1013383-1013579
Coord C2 exon
chr18:1015837-1015995
Length
197 bp
Sequences
Splice sites
3' ss Seq
TTTCACAATTCCTTCTGTAGGTG
3' ss Score
10
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
Exon sequences
Seq C1 exon
CCCCCTCCCGCCCTCCCCAAGGCGCTCTTCTTCCTGCGGCCTCCCGGGCCCGGCGAGCCTCTGTGCGGGGATCTGCCCGCTGACGCCCTGCAGCACTTCGCCGCCCTGGTGGAGGAG
Seq A exon
GTGATTGTGCCCATCCTGACAAACAGGAAGAACCATCAGGGCTGGCCACGGGTGGTGTCACAGGACATCATACGTCATGTCCACAGCTTGAAAAGTGCCGTCTTTGTGGTGGTTGGCCAAGTGAAAGGCAAGACCTTGCTGCCTCTTCCAGCAGGCTCAGAGGGAATAGAGAACATTGATCTGGAACACGAGAAATT
Seq C2 exon
CCCGGAGCGGATAGATAAATCTCTTGTGCATGCCACGGAGTCGGCTATCATAGACTGGAGCTACCAGATCCAGAGAGCACTGAAGAAAGAGTCCTCAGAGCCTCTCCTGCAAGGCAGTAATCCCAACCCCAAGGTGGAACTGGAGTTCTGGAAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=0.000 C2=0.148
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF083857=DHC_N1=PU(8.2=88.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGGCGCTCTTCTTCCTG
R:
GAACTCCAGTTCCACCTTGGG
Band lengths:
249-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]