DreEX0027509 @ danRer10
Exon Skipping
Gene
ENSDARG00000103383 | dnah9
Description
dynein, axonemal, heavy chain 9 [Source:ZFIN;Acc:ZDB-GENE-020925-1]
Coordinates
chr12:193798-196379:-
Coord C1 exon
chr12:195974-196379
Coord A exon
chr12:194031-194227
Coord C2 exon
chr12:193798-193956
Length
197 bp
Sequences
Splice sites
3' ss Seq
TCTTGTCCTGTGTCTGGCAGGTT
3' ss Score
10.38
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GGTTTAACGGACAGTTTCGGTCTGTCAGTCAGAGAGATTCACCGGCGCGATGGAGGAGCAGGAACCGCTGATAACCGATAAAAGGCTGGATTATCTGGAGAACTGCGTGCTAAAGGCGCTGAACGTGAAGCCCGAGCGCTGGGAGAGATGCGTCTCCGCGGAGGAGCAGCGGAGAGTCATTCAGGAGTTCCTGGATCAGTCCGAGCACTCGACTCTCTCGGTGTCCGTCAACTCCGCCGGGCAGCTCGTACCCGCTCTCGGCCTCTCCGCCGCCGTTAAGAGCAAAGCGGTGTTTTTCGTGAAGCGGGGTAAAGGTGCACTGACCGCCGATAAAATGAAGACCCAGTTGTTCAGTGGAGACATGTGTTATTCTCCTCTCGAGCAATTTTCGGTACTGGTGGACAAG
Seq A exon
GTTGTGGAGCCGGTGTTGTCAAATTTGAACAACCAGCGAGACTTCCCTAAAGTTGTTTCTCAGGATCTCATGCGACACATTCACGCCCTTCAAAACAACGTGTTTGTTACAGCTGGTCAAATCAAAGGCAAAACCCACCTGCCCGTACCTCTGGGATTCAAGCAGTTCGAGCAGTGCAGTCAACAGTTAGATAAGAG
Seq C2 exon
GTTTCATGTGGTGGATAAAAGCCTGATTCACTCAATGGAGACGGTGGTGATTGACTGGAGTCATCAGGTCTATAAGGTCTTGAAGAAGGACTCGTCTGAGCCGCTGCTGGAGGGCCGAAATCCCACTCCACATGCAGAGATACAGTTCTGGAGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103383-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=0.000 C2=0.111
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF083857=DHC_N1=PU(11.3=88.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCGTGAAGCGGGGTAAAGG
R:
TGCATGTGGAGTGGGATTTCG
Band lengths:
248-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]