RnoEX0028636 @ rn6
Exon Skipping
Gene
ENSRNOG00000004171 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52698541-52710862:-
Coord C1 exon
chr10:52710763-52710862
Coord A exon
chr10:52701730-52701926
Coord C2 exon
chr10:52698541-52698699
Length
197 bp
Sequences
Splice sites
3' ss Seq
TTGGTGTCTCTCTTTTCCAGGTC
3' ss Score
12.93
5' ss Seq
GGTGTAAGT
5' ss Score
8.07
Exon sequences
Seq C1 exon
CAGGTCCGAGCCTCCGGGAAATCACAGCCTTCGCGGCACGGTGCTCTGCGGGGACCTGCCCGCGGTGCCGCTGGAGCACCTGGCTCCGCTGCTTTCTGAG
Seq A exon
GTCATTATTCCTGTCCTGGACAATGAAAAGAACCATCTAGACTGGCCCCACATGGTATGTCAAGACATCAGGCATCATGCCCACTCCCTGCAGTCTGATCTCCTGGTAATTCTTGAACACATGAAGGGGAGAACCTTGCTACCTCTTCCAGTTGGCTCAGAAAAAGTGGAGTTTGTGGATGGCCAGAGTGAGCCGGT
Seq C2 exon
CTTGGATTCCATAGACAAGTCAACTGTCTATGCCATGGAGTCTGCAGTGATCAAATGGAGCCACCAAGTCCAGGTGGTACTCAAGAGGGAGTCTTCTCAGCCACTCATACAAGGAGAAAAGCCCACCCCCAAGGTGGAGCTGGAGTTCTGGAAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171-'0-2,'0-1,3-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.056
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF083857=DHC_N1=PU(8.2=88.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCGGGAAATCACAGCCTTC
R:
TGCTCTTCCAGAACTCCAGCT
Band lengths:
247-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]