BtaEX6087285 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022509 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr19:30963518-30975026:+
Coord C1 exon
chr19:30963518-30963934
Coord A exon
chr19:30972599-30972795
Coord C2 exon
chr19:30974868-30975026
Length
197 bp
Sequences
Splice sites
3' ss Seq
CCCGTGCACATCTGTTCCAGGTT
3' ss Score
9.03
5' ss Seq
CACGTAAGT
5' ss Score
10.16
Exon sequences
Seq C1 exon
ATGCCGAGCGCGGAGGAGCGGGCCTCGGAGGCTGAGGACAACGCGGACGGGGAGCCCGGCGCCGACCCAAGGCTGCGACTCCTGGGGGCCTATGTGGCCCGGAGCCTGCGGCCGCCCGCGGGCGCCTGGGAGCGCTGCGCGGGCTCGGCCGATGCGGGGCAGCTGCTGCACGCCTTCCTGGGACAGGGGGCCGCGGAGGGGCCGCGACCGCTGCTGGTGGTGCGGCCCGGGCCTGGGGGCCTGGCGGTGCGCCTGGGACTGGACGCGGGACCCGAGGCCGGCCCGCCTAGGGCTAAGGGGCTTTTTTTCCTGCGCACCAGCCCTGAGCCGCCAGGCCCCCGCAGCCTCCGCGGGGCAGTGCTGTGCGGGGACCTGCCCGCCGCGCCGCTGGAGCATCTGGCCGCGCTCTTCTCAGAG
Seq A exon
GTTGTCATCCCTGTCCTGGCCAATGAGAAGAACCACCTAGACTGGCCCCACGTGGTTTGTCAAGATGTCCAGCGGCATGCCTACAGCCTCCAGGGTGACCTTCTGGTTCTCCTTGAGCAAGCGAAGGGAAAAACCCTGCTGCCCCTTCCAGTCGGCTCAGAAAACATGGGCTCTGAGGGTTCTGAAATCGAGGCCAC
Seq C2 exon
CTTGGATTCTACGGACAAGTCCATCATCTATGCCATTGAGTCTGCAGTGATCCAGTGGAGCCACCAAATCCAGCTGGTGCTCAAGAGAGAGTCTTCGCAGCCGCTCCTCCAGGGGGAGAACCCTACCCCACAGGTGGAGCTGGAGTTCTGGAGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022509-'0-1,'0-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.396 A=0.167 C2=0.093
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF083857=DHC_N1=PU(8.2=88.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTTCCTGCGCACCAGCC
R:
CCTGTGGGGTAGGGTTCTCC
Band lengths:
248-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]