MmuEX0015106 @ mm9
Exon Skipping
Gene
ENSMUSG00000056752 | Dnahc9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:65970322-65982035:-
Coord C1 exon
chr11:65981559-65982035
Coord A exon
chr11:65973359-65973555
Coord C2 exon
chr11:65970322-65970480
Length
197 bp
Sequences
Splice sites
3' ss Seq
TTGGTCTCTCTCTCTTTCAGGTC
3' ss Score
14.34
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
AGCAGAGGCAGGAGGGCCTGGCATCCCCGTCGCTAGGGAAACAGACGCTGCAGCTGGCAACACGCGATGCCCGGCGCCAAGGAGCAGGCAGCGCTGGCGGAGTCTGGGGACGAGGAGCCTGGAGACCCGAGGCTGCGGCTTCTGGGGACTTTTGTGGCTCGGAGCCTGCGTCCGGCCGCGGGCACCTGGGAGCGCTGTGCAGGCACAGCCGAGGCGGGGAGGCTGCTGCAGGCCTTCCTGGATCACAACGCTGCCTCGGATCCGCGGCCACTGCTGGTGGTTCAGTCCGGGCCCGGGGGCCTGGTGGTGACACCCGGTCTAGACGCAGGACCAGAGCCCAGCCGAGCTCGCGCCAAGGGGCTCTTTTTCTTGCGCACTAAGTCCGAGCCTCCGGGAAATCACAGCCTCCGCGGCACGGTGCTCTGCGGGGACCTACCCGCGGTGCCACTGGAGCACCTGGCCCCGCTGCTCTCAGAG
Seq A exon
GTCATTATTCCTGTCCTGGCAAATGAAAAGAACCATTTAGAATGGCCCCACATGGTATGTCAAGACATCAGACATCATGCCCACACCCTGAAGTCTGACCTCCTAGTGATCTTTGAGCACATGAAGGGGAGAACCTTGCTGCCTCTTCCAGTTGGCTCAGAAAAACTGGAGTTTGTGGATGGCCACAGTGAGCCAGT
Seq C2 exon
CTCAGATGCCATAGACAAGTCAACTCTCTATGCTGTGGAGTCTGCAGTGATCAAATGGAGCCACCAAGTCCAGGTGGTACTCAAGAGGGAGTCTTCTCAGGCACTCATACAAGGACAAAATCCCACCCCCAAGGTGGAGCTGGAGTTCTGGAAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752-'0-1,'0-0,1-1
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.358 A=0.000 C2=0.014
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF083857=DHC_N1=PU(10.7=92.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTTGCGCACTAAGTCCGAG
R:
CCTTGGGGGTGGGATTTTGTC
Band lengths:
245-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: