MmuEX0015107 @ mm9
Exon Skipping
Gene
ENSMUSG00000056752 | Dnahc9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:65968919-65973555:-
Coord C1 exon
chr11:65973359-65973555
Coord A exon
chr11:65970322-65970480
Coord C2 exon
chr11:65968919-65969049
Length
159 bp
Sequences
Splice sites
3' ss Seq
ATTTCTCTTGTCTTTTGTAGCTC
3' ss Score
10.78
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GTCATTATTCCTGTCCTGGCAAATGAAAAGAACCATTTAGAATGGCCCCACATGGTATGTCAAGACATCAGACATCATGCCCACACCCTGAAGTCTGACCTCCTAGTGATCTTTGAGCACATGAAGGGGAGAACCTTGCTGCCTCTTCCAGTTGGCTCAGAAAAACTGGAGTTTGTGGATGGCCACAGTGAGCCAGT
Seq A exon
CTCAGATGCCATAGACAAGTCAACTCTCTATGCTGTGGAGTCTGCAGTGATCAAATGGAGCCACCAAGTCCAGGTGGTACTCAAGAGGGAGTCTTCTCAGGCACTCATACAAGGACAAAATCCCACCCCCAAGGTGGAGCTGGAGTTCTGGAAGAGCAG
Seq C2 exon
GTGTGAGGACCTGGAACACATTTATAATCAACTAATGACAATCAAGGTGAAGGGAATGGCTGAACTCCTGGACAAACTTCAGAGCAGCTACTTGCCAGCTTTCAAAGCCATGTTCAGAGACGTTGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752-'1-3,'1-1,3-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.014 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF083857=DHC_N1=PU(8.2=88.9)
C2:
PF083857=DHC_N1=FE(7.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCCCACATGGTATGTCAAG
R:
GGCAAGTAGCTGCTCTGAAGT
Band lengths:
250-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: