GgaEX6015800 @ galGal3
Exon Skipping
Gene
ENSGALG00000001111 | DNAH9
Description
NA
Coordinates
chr18:1013383-1016995:+
Coord C1 exon
chr18:1013383-1013579
Coord A exon
chr18:1015837-1015995
Coord C2 exon
chr18:1016865-1016995
Length
159 bp
Sequences
Splice sites
3' ss Seq
AGCAGTCTGTTATTTTGCAGCCC
3' ss Score
6.92
5' ss Seq
CAGGTACCC
5' ss Score
8.63
Exon sequences
Seq C1 exon
GTGATTGTGCCCATCCTGACAAACAGGAAGAACCATCAGGGCTGGCCACGGGTGGTGTCACAGGACATCATACGTCATGTCCACAGCTTGAAAAGTGCCGTCTTTGTGGTGGTTGGCCAAGTGAAAGGCAAGACCTTGCTGCCTCTTCCAGCAGGCTCAGAGGGAATAGAGAACATTGATCTGGAACACGAGAAATT
Seq A exon
CCCGGAGCGGATAGATAAATCTCTTGTGCATGCCACGGAGTCGGCTATCATAGACTGGAGCTACCAGATCCAGAGAGCACTGAAGAAAGAGTCCTCAGAGCCTCTCCTGCAAGGCAGTAATCCCAACCCCAAGGTGGAACTGGAGTTCTGGAAGAACAG
Seq C2 exon
GTGTGATGACCTGGAGTGCATTTACAGTCAGCTGAGGACAAGGAAGGTTAGGAACATGATGGAGATGCTAGAGAGAGTTGAGAGCAGCTACTTACCAGCCTTCAGAACTATGCTCATGGATGTTGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.148 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF083857=DHC_N1=PU(8.2=88.9)
C2:
PF083857=DHC_N1=FE(7.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATTGTGCCCATCCTGACA
R:
ACCTTCCTTGTCCTCAGCTGA
Band lengths:
245-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]