BtaEX6087284 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022509 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr19:30972599-30975771:+
Coord C1 exon
chr19:30972599-30972795
Coord A exon
chr19:30974868-30975026
Coord C2 exon
chr19:30975641-30975771
Length
159 bp
Sequences
Splice sites
3' ss Seq
GAGACTTGTCTCTTTCGCAGCTT
3' ss Score
6.63
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
GTTGTCATCCCTGTCCTGGCCAATGAGAAGAACCACCTAGACTGGCCCCACGTGGTTTGTCAAGATGTCCAGCGGCATGCCTACAGCCTCCAGGGTGACCTTCTGGTTCTCCTTGAGCAAGCGAAGGGAAAAACCCTGCTGCCCCTTCCAGTCGGCTCAGAAAACATGGGCTCTGAGGGTTCTGAAATCGAGGCCAC
Seq A exon
CTTGGATTCTACGGACAAGTCCATCATCTATGCCATTGAGTCTGCAGTGATCCAGTGGAGCCACCAAATCCAGCTGGTGCTCAAGAGAGAGTCTTCGCAGCCGCTCCTCCAGGGGGAGAACCCTACCCCACAGGTGGAGCTGGAGTTCTGGAGGACCAG
Seq C2 exon
GTGTGAAGATCTGGAATACATTTATAATCAGCTGAGAATGATAAAGAGGAGGGGCATGGTGGGACTTCTGGATAAGCTTCAGAGCAGCTACTTTCCAGCTTTCCAAGCCATGTTCCGAGACATTGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022509-'2-2,'2-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=0.093 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF083857=DHC_N1=PU(8.2=88.9)
C2:
PF083857=DHC_N1=FE(7.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTCCTGGCCAATGAGAAG
R:
CCACCATGCCCCTCCTCTTTA
Band lengths:
250-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]