HsaEX0020221 @ hg38
Exon Skipping
Gene
ENSG00000007174 | DNAH9
Description
dynein axonemal heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr17:11608129-11611780:+
Coord C1 exon
chr17:11608129-11608325
Coord A exon
chr17:11610396-11610554
Coord C2 exon
chr17:11611650-11611780
Length
159 bp
Sequences
Splice sites
3' ss Seq
TGTTGTTTTGTCTTTCACAGCTT
3' ss Score
11.13
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GTTGTTCTACCCGTCCTGGCCAATGAGAAGAATCGCCTAAACTGGCCCCACATGATATGTGAGGATGTCAGGCGGCACGCCCACAGCCTCCAATGTGACCTCTCAGTTATACTTGAGCAAGTGAAGGGAAAAACTTTGCTGCCTCTTCCAGCAGGCTCAGAAAAAATGGAGTTTGCGGATTCCAAAAGTGAGACAGT
Seq A exon
CTTGGATTCTATAGATAAGTCAGTCATCTATGCCATTGAGTCTGCAGTGATCAAATGGAGCTACCAAGTCCAGGTGGTACTCAAGAGAGAGTCTTCCCAGCCACTCTTACAAGGGGAGAATCCCACCCCTAAGGTGGAGTTGGAGTTCTGGAAGAGCAG
Seq C2 exon
GTATGAAGATCTGAAATACATCTATAATCAACTGAGAACAATAACGGTGAGGGGCATGGCCAAGCTCCTGGACAAGCTTCAGAGTAGCTACTTTCCAGCTTTCAAAGCCATGTACAGAGATGTTGTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174-'3-3,'3-1,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.018 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF083857=DHC_N1=PU(51.1=88.9)
C2:
PF083857=DHC_N1=PD(47.9=71.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCCTGGCCAATGAGAAGAA
R:
CATGCCCCTCACCGTTATTGT
Band lengths:
244-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development