RnoEX6047721 @ rn6
Exon Skipping
Gene
ENSRNOG00000004171 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52697114-52701926:-
Coord C1 exon
chr10:52701730-52701926
Coord A exon
chr10:52698541-52698699
Coord C2 exon
chr10:52697114-52697244
Length
159 bp
Sequences
Splice sites
3' ss Seq
GAATTTCTTGTCTTTTGCAGCTT
3' ss Score
9.84
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GTCATTATTCCTGTCCTGGACAATGAAAAGAACCATCTAGACTGGCCCCACATGGTATGTCAAGACATCAGGCATCATGCCCACTCCCTGCAGTCTGATCTCCTGGTAATTCTTGAACACATGAAGGGGAGAACCTTGCTACCTCTTCCAGTTGGCTCAGAAAAAGTGGAGTTTGTGGATGGCCAGAGTGAGCCGGT
Seq A exon
CTTGGATTCCATAGACAAGTCAACTGTCTATGCCATGGAGTCTGCAGTGATCAAATGGAGCCACCAAGTCCAGGTGGTACTCAAGAGGGAGTCTTCTCAGCCACTCATACAAGGAGAAAAGCCCACCCCCAAGGTGGAGCTGGAGTTCTGGAAGAGCAG
Seq C2 exon
GTGCGAGGACCTGGAACACATTTATAACCAACTAATGACAATCAAGGTAAGGGGCATGGCTGGACTCCTGGACAAACTTCAGAGCAGCTACTTGCCAGCTTTCAAAGCCATGTTCCAAGACGTTGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171-'3-3,'3-2,4-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.056 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF083857=DHC_N1=PU(8.2=88.9)
C2:
PF083857=DHC_N1=FE(7.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACCATCTAGACTGGCCCC
R:
TTTGTCCAGGAGTCCAGCCAT
Band lengths:
245-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]