DreEX6067085 @ danRer10
Exon Skipping
Gene
ENSDARG00000103383 | dnah9
Description
dynein, axonemal, heavy chain 9 [Source:ZFIN;Acc:ZDB-GENE-020925-1]
Coordinates
chr12:193590-194227:-
Coord C1 exon
chr12:194031-194227
Coord A exon
chr12:193798-193956
Coord C2 exon
chr12:193590-193720
Length
159 bp
Sequences
Splice sites
3' ss Seq
ACACTGAATGACGTTTGCAGGTT
3' ss Score
6.14
5' ss Seq
CAGGTTGGA
5' ss Score
5.59
Exon sequences
Seq C1 exon
GTTGTGGAGCCGGTGTTGTCAAATTTGAACAACCAGCGAGACTTCCCTAAAGTTGTTTCTCAGGATCTCATGCGACACATTCACGCCCTTCAAAACAACGTGTTTGTTACAGCTGGTCAAATCAAAGGCAAAACCCACCTGCCCGTACCTCTGGGATTCAAGCAGTTCGAGCAGTGCAGTCAACAGTTAGATAAGAG
Seq A exon
GTTTCATGTGGTGGATAAAAGCCTGATTCACTCAATGGAGACGGTGGTGATTGACTGGAGTCATCAGGTCTATAAGGTCTTGAAGAAGGACTCGTCTGAGCCGCTGCTGGAGGGCCGAAATCCCACTCCACATGCAGAGATACAGTTCTGGAGAAACAG
Seq C2 exon
GCTTGCTGATCTTCAGGGAATCCAACAGCAGCTCCAGTCTTCTAAAGTCCTGACGCTGGCGGAGCTTCTGCTCGCTGTGGACAGCAGCTATTATCCTGCATTTGCAAAAATGATCCAGGACGTCATGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103383-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.111 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF083857=DHC_N1=PU(11.3=88.9)
C2:
PF083857=DHC_N1=FE(10.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGCCGGTGTTGTCAAATT
R:
GCCAGCGTCAGGACTTTAGAA
Band lengths:
253-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]