RnoEX6030054 @ rn6
Exon Skipping
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:146090725-146096861:-
Coord C1 exon
chr6:146096718-146096861
Coord A exon
chr6:146092309-146092505
Coord C2 exon
chr6:146090725-146090914
Length
197 bp
Sequences
Splice sites
3' ss Seq
AAATGTTGTTCTTTGTCCAGATA
3' ss Score
5.95
5' ss Seq
TCGGTAAGC
5' ss Score
9.86
Exon sequences
Seq C1 exon
ATTCCAAGAGATGTGAAACACAAGCTGGTTTATTTTGCAAAGAAGATGACTGGGAGCACGGGAGAAAGTGATTTCTCCCAAACCGTTTTGTTTGGAGAAATACCCAGGTCATTGTTCACACATGTAACTGCATTCCTAGATGAG
Seq A exon
ATATTAGTCCCAATTCTGTCTAATAAGAACAATCATGAGTCCTGGTCATGTTTTATTTCACAAGATGTGGAACATCACACAGAAATCATGAAAAACAAGATGCATATTTTTAGGGGCAAAATGTCAAGAAGAACTCATCTGCCAATTCCTACGATTGCAGAAAATATTGATCTGGATCAGCATTACTCAGTGACTCG
Seq C2 exon
GCCACAATCAGATGAGAGGAGAATACTCCATGCCATTGAATCTGTAGTCATTAAATGGTCACATCAGATCCAAGAAATCATAGAAAAAGATTCAGCACAGCCTCTATTGAGTGGCCTCCACCCAACCCCTGAGACAGAGCTGGACTTCTGGACCATGAGGCATGATAACCTGAAATGCATATACCATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451-'2-2,'2-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.015 C2=0.016
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF083857=DHC_N1=PU(10.0=90.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCACGGGAGAAAGTGATT
R:
TCATGGTCCAGAAGTCCAGCT
Band lengths:
250-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]