HsaEX6007427 @ hg19
Exon Skipping
Gene
ENSG00000105877 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:2942]
Coordinates
chr7:21584624-21599410:+
Coord C1 exon
chr7:21584624-21584767
Coord A exon
chr7:21598420-21598616
Coord C2 exon
chr7:21599221-21599410
Length
197 bp
Sequences
Splice sites
3' ss Seq
CTATGTTTCTCTTTCTCTAGATT
3' ss Score
10.38
5' ss Seq
CAAGTACGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
ATTCCAAGAGATGCAAACCATAAACTTGTTTTTATTTCCAAGAAGATTACTGAAAGCATTGGAGTAAATGACTTTTCTCAAGTGGTTTTATTTGGAGAGTTACCTGCGTTGTCTCTTGGACATGTATCTGCTTTCCTTGATGAG
Seq A exon
ATTTTAGTGCCAGTTCTTTCTAATAAGAACAACCATAAGTCCTGGTCCTGTTTTACTTCACAAGATATGGAATATCACATAGAAGTCATGAAAAAGAAGATGTATATTTTTAGGGGCAAAATGTCTAGAAGAACTCTTCTACCAATTCCCACTGTTGCAGGAAAGATGGATCTGGATCAGAATTGTTCAGAGAACAA
Seq C2 exon
GCCACCGTCAAACGAAAGGATAATACTTCATGCAATTGAATCTGTGGTTATTGAATGGTCACATCAAATCCAAGAAATTATAGAAAGAGATTCAGTGCAGCGTTTGTTGAATGGTCTTCACTTGTCTCCTCAAGCAGAACTAGATTTCTGGATGATGAGGAGAGAAAATCTGTCATGCATTTATGATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105877-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.106 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF083857=DHC_N1=PU(10.0=90.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAAGAGATGCAAACCATAAACT
R:
ACCATTCAACAAACGCTGCAC
Band lengths:
257-454
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)