DreEX0027439 @ danRer10
Exon Skipping
Gene
ENSDARG00000077384 | dnah11
Description
dynein, axonemal, heavy chain 11 [Source:ZFIN;Acc:ZDB-GENE-100922-8]
Coordinates
chr16:19566332-19567491:-
Coord C1 exon
chr16:19567468-19567491
Coord A exon
chr16:19567061-19567257
Coord C2 exon
chr16:19566332-19566521
Length
197 bp
Sequences
Splice sites
3' ss Seq
TGTCAATATTTTTTAACAAGGTG
3' ss Score
5.27
5' ss Seq
GCTGTATGA
5' ss Score
0.48
Exon sequences
Seq C1 exon
CAGCTGTCAGACACCATGGAGAAG
Seq A exon
GTGTGTCTGCCGCTTCTGTCGAACAAGAAGAATCACCAAATGTGGCCAAATGTCGTATCACAGGATGTGAAGCAGCACATAGAGAATTTGCAAAGCAGGGTGACTGTGGTGAAAGGACAATATTATGGCAAAACCATTCTTCCTGTTCCTGCCATCAGAGAATGGATTGAGCAGTGTCAAGAGGCAACAGTCATGCT
Seq C2 exon
GCATGACAGTCGCAACAGGGCCATGATACATGCAGCCGAGTCCATGGTCATCAGCTGGACACACATGATCCATAAAGTCTTAAGAGAAGATTCTACTGAACTGATTGTAAAAGGATTGAATCCCGGACCAAAAACTGAACTTGACTTCTGGAGGTCCAGAAAAATGAACATTCAGAGCATTAATGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077384-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF083857=DHC_N1=PU(10.0=90.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGTCAGACACCATGGAGA
R:
TGTTCATTAATGCTCTGAATGTTCA
Band lengths:
212-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]