HsaEX6007394 @ hg38
Exon Skipping
Gene
ENSG00000105877 | DNAH11
Description
dynein axonemal heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr7:21744438-21748742:+
Coord C1 exon
chr7:21744438-21744599
Coord A exon
chr7:21744870-21745063
Coord C2 exon
chr7:21748580-21748742
Length
194 bp
Sequences
Splice sites
3' ss Seq
TTCTCTTTCTCATCCTGCAGGGT
3' ss Score
11.97
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
Exon sequences
Seq C1 exon
GGGATTTTATTTGCTTCTCCTGAGTGTTTAAAAGGTCCACTTGATTTAATACATCTGTGGCTTCATGAATCTGCCCGTGTTTATGGAGACAAACTGATAGACAAAAAAGATTGTGATTTGTTTCAGAGAAGAATGCTGGAAACTGCTTATAAATATTTTGAA
Seq A exon
GGTATAGATAGTCACATGCTGCTTCAACAGCCCCTCATTTATTGCCACTTTGCTGATAGAGGGAAGGACCCACATTACATGCCAGTGAAGGACTGGGAAGTGCTGAAGACGATTCTTACAGAAACGTTAGACAACTACAATGAACTAAATGCTGCCATGCACCTAGTTTTGTTTGAAGATGCCATGCAACATGT
Seq C2 exon
GTGTCGCATCAGCCGGATCTTACGAACCCCTCAGGGCTGTGCTCTCTTGGTTGGAGTTGGGGGCAGTGGCAAGCAGAGCTTGTCCAGGCTGGCAGCTTACCTTCGTGGCCTTGAGGTCTTTCAGATCACTCTGACCGAGGGCTATGGAATCCAGGAACTTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105877-'77-80,'77-79,79-80
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PD(8.1=40.7)
A:
PF127802=AAA_8=PU(7.1=29.2)
C2:
PF127802=AAA_8=FE(20.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGCTTCATGAATCTGCCC
R:
CATAGCCCTCGGTCAGAGTGA
Band lengths:
253-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains