RnoEX6030088 @ rn6
Exon Skipping
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:145914141-145918030:-
Coord C1 exon
chr6:145917869-145918030
Coord A exon
chr6:145917446-145917639
Coord C2 exon
chr6:145914141-145914303
Length
194 bp
Sequences
Splice sites
3' ss Seq
GTTTGTGCTTCCTTCTGCAGGGT
3' ss Score
11.4
5' ss Seq
CGTGTGAGT
5' ss Score
7.42
Exon sequences
Seq C1 exon
GGAATTCTGTTTGCCTCTCCTGAGTGTTTAAAATGCCCAGAAGACTTAGCACGCCTGTGGCTTCATGAAACATCACGTGTTTATGGAGACAGACTGGTAGACGCAAACGATTCCGACTTATTTCAGAGGAAAATGCTGGAAGCTGCCCATAAGTACTTCAAA
Seq A exon
GGTGCAGATGCTAACACGCTGCAGCAGCAGCCCCTCGTCTACTGTCACTTTGCCAGTGGCAGGGAAGACCCTTGTTACGAGCCCGTGAAGGACTGGGAAGGGCTAAAGGCAGTTCTTACAGAGATGATGGGCAACTACAATGAGCTGCACTCCGAGATGCACCTCGTGCTCTTTGAAGACGCCATGCAGCACGT
Seq C2 exon
GTGCCGAATCAGCCGCATTCTTCGGACCCCTCAAGGCCACGCCCTCTTGGTTGGAGTTGGAGGCAGTGGCAAGCAAAGCCTGTCTAGGCTGGCAGCTTACATCTGCAGCTTGGAGGTCTTTCAGATCACTCTGACAGAAGGCTATGGGACCCAAGATCTCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451-'67-66,'67-65,68-66=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PD(8.1=40.7)
A:
PF127802=AAA_8=PU(7.1=29.2)
C2:
PF127802=AAA_8=FE(20.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAAGACTTAGCACGCCTG
R:
AGACCTCCAAGCTGCAGATGT
Band lengths:
245-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]