GgaEX1020249 @ galGal4
Exon Skipping
Gene
ENSGALG00000001111 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr18:1102648-1107424:+
Coord C1 exon
chr18:1102648-1102809
Coord A exon
chr18:1104629-1104825
Coord C2 exon
chr18:1107262-1107424
Length
197 bp
Sequences
Splice sites
3' ss Seq
CGTATGTGTTTCTCTGACAGGAC
3' ss Score
9.68
5' ss Seq
TGTGTAAGG
5' ss Score
4.52
Exon sequences
Seq C1 exon
GGCCTTCTGTTTTCTACCCCTGAATGTCTGAAGCAACCGCAAGACCTGGTGAAGCTCTACCTGCATGAGTCAAACCGGGTGTACCGGGATAAGATGGTTGAAGAAAAGGATTATGGCACCTTTGATAAAATCCAGCTGGAGATGGTGAAGAAGTTCTATGAC
Seq A exon
GACATTGAGGAGACCTTAGAGCAGACCAAGCAAATGAATGTTTATTGCCATTTTGCTAAAGGCATTGGCGAACCTAGTTATAGGCCTGTTCCAACCTGGGAGGAGTTGAACCAGATCCTCGTGGAAGCCTTGGAAAACTACAATGAAGTCAATCCTGCCATGAACCTGGTGCTATTTGAGGATGCCATGTGCCATGT
Seq C2 exon
TTGCCGCATCAACCGTATCCTGGAGTCCCCCAGAGGAAATGCGCTCTTGGTCGGCGTGGGCGGCAGCGGCAAGCAGAGCCTGACCAGGCTGGCAGCCTTCATCAGCTCTCTGGAGGTCTTCCAGATCACTTTGAGGAAAGGCTACGGGATCCCTGACCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111-'35-37,'35-36,36-37
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PD(8.1=40.7)
A:
PF127802=AAA_8=PU(7.1=28.8)
C2:
PF127802=AAA_8=FE(20.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATGTCTGAAGCAACCGCA
R:
CAGAGAGCTGATGAAGGCTGC
Band lengths:
254-451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]