MmuEX6086223 @ mm9
Exon Skipping
Gene
ENSMUSG00000056752 | Dnahc9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:65783468-65794849:-
Coord C1 exon
chr11:65794688-65794849
Coord A exon
chr11:65789839-65790035
Coord C2 exon
chr11:65783468-65783630
Length
197 bp
Sequences
Splice sites
3' ss Seq
TCCCTGTGTCTTCTCTCCAGGAT
3' ss Score
12.17
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
GGCATTCTTTTCTCCTCCGTGGAATGTGTAAAGTCCACACAGGACCTAGTGAAACTCTATCTGCACGAGTCAAGTCGGGTTTATCGGGATAAGATGGTGGAAGAAAAGGATTTCAATCTTTTTGACAAAATCCAAACAGAATTCCTCAAGAAAAATTTTGAT
Seq A exon
GATAGTGAAGAGGTGCTGAAGCAGACCCAGAACCTGAACATGTATTGTCACTTTGCAAATGGCATTGGTGAGCCCAAGTACATGCCTGTGCAATCATGGGACCTTCTGAATCAGACTCTGGTGGAAGCCCTGGAGAGCCACAATGAAGTGAATGCTGTGATGGACCTAGTTCTCTTTGAGGATGCCATACGTCACAT
Seq C2 exon
CTGTCACATCAACCGAATCCTGGAGTCCCCTCGAGGAAATGCCCTGCTAGTTGGTGTAGGTGGGAGTGGTAAGCAGAGTCTGACAAAGCTGGCAGCTTTTATCAGTTCCATGGATGTATTCCAGATCACCCTTCGCAAAGGCTACCAAATCCCTGACTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752-'45-46,'45-45,46-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PD(8.1=44.0)
A:
PF127802=AAA_8=PU(7.1=28.8)
C2:
PF127802=AAA_8=FE(20.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACGAGTCAAGTCGGGTTTA
R:
AGGGATTTGGTAGCCTTTGCG
Band lengths:
254-451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: