BtaEX6087254 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022509 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr19:31127472-31133601:+
Coord C1 exon
chr19:31127472-31127633
Coord A exon
chr19:31128490-31128686
Coord C2 exon
chr19:31133439-31133601
Length
197 bp
Sequences
Splice sites
3' ss Seq
CCCCTGTGTCTCATCACCAGGAC
3' ss Score
10.48
5' ss Seq
TGTGTAAGC
5' ss Score
4.52
Exon sequences
Seq C1 exon
GGTATTCTCTTCTCCTCCGTGGAATGTGTCAGGTCCTCACAGGACCTAGTAAATCTCTATCTGCACGAATCGAATCGGGTTTATCGGGATAAGATGGTGGAAGAGAAGGACCTTGATCTTTTTGATAAGATCCAGGTAGACGTGGTCAAGAAAATTTTTGAT
Seq A exon
GACCTTGGAGAGACTGTGGAGCAGACCCAAAGCCTGAACGTGTATTGCCATTTTGCACACGGTATCGGGGAGCCCAAGTACATGCCTGTCCAGTCGTGGGAACTTCTGACCCAGACGCTGGTGGAGGCCCTGGAGAGCCACAACGAAGTCAACACGGTGATGGACCTGGTGCTCTTCGAGGACGCCGTGCGCCATGT
Seq C2 exon
CTGCCACATTAATCGCATCCTGGAGTCCCCCCAGGGAAATGCTCTGCTAGTCGGCGTTGGGGGGAGTGGCAAGCAGAGCCTGACCCGGCTGGCGGCTTTCGTCAGCTCCATGGACATATTCCAGATCACATTGCGGAGAGGCTACCAGATCCCGGACTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022509-'60-70,'60-69,61-70=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PD(8.0=40.7)
A:
PF127802=AAA_8=PU(7.1=28.8)
C2:
PF127802=AAA_8=FE(20.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGTCAGGTCCTCACAGGA
R:
GTCCATGGAGCTGACGAAAGC
Band lengths:
254-451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]