HsaEX0020222 @ hg38
Exon Skipping
Gene
ENSG00000007174 | DNAH9
Description
dynein axonemal heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr17:11793503-11807894:+
Coord C1 exon
chr17:11793503-11793664
Coord A exon
chr17:11797597-11797793
Coord C2 exon
chr17:11807732-11807894
Length
197 bp
Sequences
Splice sites
3' ss Seq
TTCCTGTGTCTCATCACCAGGAT
3' ss Score
9.68
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
Exon sequences
Seq C1 exon
GGCATTCTCTTCTCCTCAGTGGAATGTGTGAAATCCACATGGGATCTTATAAGGCTCTATCTGCATGAATCAAATCGAGTTTATCGGGATAAGATGGTAGAAGAAAAGGACTTTGATCTTTTTGATAAAATCCAGACAGAAGTGCTCAAGAAAACTTTTGAT
Seq A exon
GATATTGAAGACCCTGTGGAGCAGACCCAAAGCCCGAACCTGTATTGTCACTTTGCAAATGGTATTGGGGAGCCCAAATACATGCCTGTACAGTCTTGGGAACTTTTGACCCAGACTCTGGTGGAGGCCTTGGAGAACCACAATGAAGTCAACACAGTGATGGACCTAGTTCTCTTTGAGGATGCCATGCGCCATGT
Seq C2 exon
CTGCCATATCAATCGCATCTTGGAGTCCCCGCGGGGAAATGCTCTGCTGGTTGGTGTAGGTGGGAGCGGCAAGCAGAGCCTGACAAGGCTGGCAGCTTTCATCAGCTCCATGGATGTCTTCCAGATCACACTGCGCAAAGGCTACCAGATCCAGGACTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174-'78-73,'78-71,82-73
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PD(8.1=40.7)
A:
PF127802=AAA_8=PU(7.1=28.8)
C2:
PF127802=AAA_8=FE(20.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCTCAGTGGAATGTGTGA
R:
CTGATGAAAGCTGCCAGCCTT
Band lengths:
257-454
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development