HsaEX6007394 @ hg19
Exon Skipping
Gene
ENSG00000105877 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:2942]
Coordinates
chr7:21784056-21788360:+
Coord C1 exon
chr7:21784056-21784217
Coord A exon
chr7:21784488-21784681
Coord C2 exon
chr7:21788198-21788360
Length
194 bp
Sequences
Splice sites
3' ss Seq
TTCTCTTTCTCATCCTGCAGGGT
3' ss Score
11.97
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
Exon sequences
Seq C1 exon
GGGATTTTATTTGCTTCTCCTGAGTGTTTAAAAGGTCCACTTGATTTAATACATCTGTGGCTTCATGAATCTGCCCGTGTTTATGGAGACAAACTGATAGACAAAAAAGATTGTGATTTGTTTCAGAGAAGAATGCTGGAAACTGCTTATAAATATTTTGAA
Seq A exon
GGTATAGATAGTCACATGCTGCTTCAACAGCCCCTCATTTATTGCCACTTTGCTGATAGAGGGAAGGACCCACATTACATGCCAGTGAAGGACTGGGAAGTGCTGAAGACGATTCTTACAGAAACGTTAGACAACTACAATGAACTAAATGCTGCCATGCACCTAGTTTTGTTTGAAGATGCCATGCAACATGT
Seq C2 exon
GTGTCGCATCAGCCGGATCTTACGAACCCCTCAGGGCTGTGCTCTCTTGGTTGGAGTTGGGGGCAGTGGCAAGCAGAGCTTGTCCAGGCTGGCAGCTTACCTTCGTGGCCTTGAGGTCTTTCAGATCACTCTGACCGAGGGCTATGGAATCCAGGAACTTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105877-'57-57,'57-56,58-57=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PD(8.1=40.7)
A:
PF127802=AAA_8=PU(7.1=29.2)
C2:
PF127802=AAA_8=FE(20.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGCTTCATGAATCTGCCC
R:
CATAGCCCTCGGTCAGAGTGA
Band lengths:
253-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)