BtaEX0011564 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013078 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr4:30422121-30431196:+
Coord C1 exon
chr4:30422121-30422264
Coord A exon
chr4:30430586-30430782
Coord C2 exon
chr4:30430998-30431196
Length
197 bp
Sequences
Splice sites
3' ss Seq
AAATGTTTTTCTTTTTCTAGATT
3' ss Score
9.03
5' ss Seq
CAAGTATGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
ATTCCAAGAGATGTAAAACATAAACTTGTTTATATTGCCAAGAAGACTACTGAAAACATTGGAGTAAATGACTTCTGTCAGATAGTTTTATTTGGAGAGTTACCTGCCTCATCTCTTGGACACGTAACTGCTTTCCTAGACGAG
Seq A exon
ATTTTAGTGCCAATTATTTCTAATAAGAACAACCATAAATCCTGGTCATGCTTTATTTCACAAGACATGGAACATCATATAGAAGTCTTGAAAAGTAAAATGCATATTTTTAGGGGCAAAATGTTGAGAAGAACTCTTCTACCAATTCCCACTATTGCAGAAAACATTGACCTGGATCAGAAATATTCAGAGACCAA
Seq C2 exon
TGTTTGCAGACTGGAGCCAAATGAAAGGAGAGTACTCCATGCAATTGAATCAGTGGTTATTAAATGGTCACATCAAATCCAAGAAATCATAGAGAAAGATTCAGTGCAGCCTTTGCTAAATGGTCTTCACTCAAATCCTCAAACTGAACTGGATTTCTGGATGATGAGAAGAGAGAACCTATCATGCATTTATGATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013078_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF083857=DHC_N1=PU(10.0=90.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGGAGAGTTACCTGCCTCA
R:
TGCATGATAGGTTCTCTCTTCTCA
Band lengths:
242-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development