HsaEX6007427 @ hg38
Exon Skipping
Gene
ENSG00000105877 | DNAH11
Description
dynein axonemal heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr7:21545006-21559792:+
Coord C1 exon
chr7:21545006-21545149
Coord A exon
chr7:21558802-21558998
Coord C2 exon
chr7:21559603-21559792
Length
197 bp
Sequences
Splice sites
3' ss Seq
CTATGTTTCTCTTTCTCTAGATT
3' ss Score
10.38
5' ss Seq
CAAGTACGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
ATTCCAAGAGATGCAAACCATAAACTTGTTTTTATTTCCAAGAAGATTACTGAAAGCATTGGAGTAAATGACTTTTCTCAAGTGGTTTTATTTGGAGAGTTACCTGCGTTGTCTCTTGGACATGTATCTGCTTTCCTTGATGAG
Seq A exon
ATTTTAGTGCCAGTTCTTTCTAATAAGAACAACCATAAGTCCTGGTCCTGTTTTACTTCACAAGATATGGAATATCACATAGAAGTCATGAAAAAGAAGATGTATATTTTTAGGGGCAAAATGTCTAGAAGAACTCTTCTACCAATTCCCACTGTTGCAGGAAAGATGGATCTGGATCAGAATTGTTCAGAGAACAA
Seq C2 exon
GCCACCGTCAAACGAAAGGATAATACTTCATGCAATTGAATCTGTGGTTATTGAATGGTCACATCAAATCCAAGAAATTATAGAAAGAGATTCAGTGCAGCGTTTGTTGAATGGTCTTCACTTGTCTCCTCAAGCAGAACTAGATTTCTGGATGATGAGGAGAGAAAATCTGTCATGCATTTATGATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105877-'6-3,'6-2,12-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.106 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF083857=DHC_N1=PU(10.0=90.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAAGAGATGCAAACCATAAACT
R:
ACCATTCAACAAACGCTGCAC
Band lengths:
257-454
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains