MmuEX7007651 @ mm10
Exon Skipping
Gene
ENSMUSG00000018581 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:118190719-118196699:-
Coord C1 exon
chr12:118196556-118196699
Coord A exon
chr12:118192279-118192475
Coord C2 exon
chr12:118190719-118190908
Length
197 bp
Sequences
Splice sites
3' ss Seq
AAATGTTGCTCTTTGTCTAGATA
3' ss Score
4.93
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
ATTCCAAGAGATGTGAAACACAAGCTGGTTTATTTTGCCAAGAAGATGACTGAAAACATGGGAGAAAGTGATTTCTCCCAAACCATTTTATTTGGAGAAATACCCAGGTCATTGCTTACACATGTAACTGCATTCCTAGATGAG
Seq A exon
ATATTAGTCCCAGTTCTGTCTAATAAGAACAACCATACGTCCTGGTCATGCTTTATCTCACAAGATGTGGAACATCACACAGAAGTCATGAAAAATAAGATGCACATTTTTAGGGGCAAAATGTCAAGAAGAACTCATCTGCCAATTCCTACTATTGCAGAAAATATTGACTTGGATCAGCATTACTTGGTGACCAG
Seq C2 exon
GCCACAATCAGATGAGAGAAGAATACTCCATGCCATTGAATCTTTAGTCATTAAATGGTCACATCAGATCCAAGAAATCATAGAAAAAGATTCAGCACACCCTCTCTTGAGTGGTCTCCATCCGACCCCTGAGACAGAGCTGGACTTCTGGACCATGAGGCATGATAACTTGAAATGCATATACTCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-'4-2,'4-1,6-2=AN
Average complexity
A_C3
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.016
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF083857=DHC_N1=PU(10.0=90.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAGAAAGTGATTTCTCCCA
R:
TCATGGTCCAGAAGTCCAGCT
Band lengths:
244-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types