MmuALTA0005688-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000033335 | Dnm2
Description
dynamin 2 [Source:MGI Symbol;Acc:MGI:109547]
Coordinates
chr9:21494504-21499313:+
Coord C1 exon
chr9:21494504-21494617
Coord A exon
chr9:21499258-21499260
Coord C2 exon
chr9:21499261-21499313
Length
3 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
CCCCTGCCCTCTCTCCTCAGGAG
3' ss Score
12.72
Exon sequences
Seq C1 exon
GTGATCCGCAGGGGCTGGTTGACCATCAACAATATCAGCTTGATGAAGGGTGGCTCCAAGGAGTACTGGTTCGTGCTGACAGCTGAGTCATTGTCTTGGTACAAGGATGAGGAG
Seq A exon
GAG
Seq C2 exon
AAAGAAAAGAAGTACATGCTGCCACTGGACAACCTCAAGATCCGGGACGTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033335-47-43,47-42-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(35.6=97.4)
A:
NA
C2:
PF0016924=PH=FE(34.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGGAGTACTGGTTCGTGC
R:
GTTGTCCAGTGGCAGCATGTA
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types