RnoALTA0012456-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000007649 | Dnm2
Description
dynamin 2 [Source:RGD Symbol;Acc:2513]
Coordinates
chr8:22526287-22532388:+
Coord C1 exon
chr8:22526287-22526400
Coord A exon
NA
Coord C2 exon
chr8:22532279-22532388
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
CTTCTGCACTCTCTCCTCAGGAA
3' ss Score
11.88
Exon sequences
Seq C1 exon
GTGATCCGCAGGGGCTGGTTGACCATCAACAACATCAGCTTGATGAAAGGCGGTTCCAAGGAGTACTGGTTCGTGCTGACTGCTGAGTCGTTGTCTTGGTACAAGGATGAAGAG
Seq A exon
NA
Seq C2 exon
GAAAAAGAAAAGAAGTACATGCTGCCACTAGACAACCTCAAAATACGGGATGTGGAGAAGGGCTTCATGTCCAACAAGCATGTGTTTGCCATCTTCAACACAGAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007649-35-28,35-27-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(35.6=97.4)
A:
NA
C2:
PF0016924=PH=FE(34.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTGGTTGACCATCAA
R:
TGCTCTGTGTTGAAGATGGCA
Band lengths:
210-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]