MmuALTA0005831-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000060461 | Dppa5a
Description
developmental pluripotency associated 5A [Source:MGI Symbol;Acc:MGI:101800]
Coordinates
chr9:78367744-78368177:-
Coord C1 exon
chr9:78367985-78368177
Coord A exon
chr9:78367869-78367895
Coord C2 exon
chr9:78367744-78367868
Length
27 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
TTCCCCGGACAGGCCCACAGGGA
3' ss Score
-0.8
Exon sequences
Seq C1 exon
TCCTGAACCTGGAGCTGTGGGCCGTGCGTGGTGGATAAGCTTGATCTCGTCTTCCCTGAAGTCTGGTTCCTTGGCAGGATGATGGTGACCCTCGTGACCCGTAAAGATATCCCCCCGTGGGTGAAAGTTCCTGAAGACCTGAAAGATCCAGAAGTATTCCAGGTCCAGTCGCTGGTGCTGAAATATCTGTTTG
Seq A exon
GGATCTCGAATGTCTCACATCGAGCAG
Seq C2 exon
GTGAGCCAGGCCATGTTTGAGCTGAAGAACCTGGAATCTCCCGAAGAACTTATCGAGGTCTTCATTTACGGCTCTCAAAACAACAAGATTCGGGCTAAATGGATGCTTCAGTCCATGGCTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060461-3-2,3-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0001324=KH_1=PU(23.8=38.5)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTCGTGACCCGTAAAGAT
R:
CTCAAACATGGCCTGGCTCAC
Band lengths:
127-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types