MmuALTA0005831-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000060461 | Dppa5a
Description
developmental pluripotency associated 5A [Source:MGI Symbol;Acc:MGI:101800]
Coordinates
chr9:78215551-78218354:-
Coord C1 exon
chr9:78218254-78218354
Coord A exon
chr9:78215676-78215710
Coord C2 exon
chr9:78215551-78215675
Length
35 bp
Sequences
Splice sites
5' ss Seq
TAGGTGTCA
5' ss Score
-2.81
3' ss Seq
CATTGCCTTTCCCCGGACAGGCC
3' ss Score
9.82
Exon sequences
Seq C1 exon
GTGTGTGTATGGGTACTAAGGATGGCATGAAAAGGGGGCCCCAGGCACTGGAAAGGAGAGGCTTTCTCTGTGACACACCCCAAATATCTGAGTATCTGTAG
Seq A exon
GCCCACAGGGATCTCGAATGTCTCACATCGAGCAG
Seq C2 exon
GTGAGCCAGGCCATGTTTGAGCTGAAGAACCTGGAATCTCCCGAAGAACTTATCGAGGTCTTCATTTACGGCTCTCAAAACAACAAGATTCGGGCTAAATGGATGCTTCAGTCCATGGCTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060461-0-2,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0001324=KH_1=PD(74.6=75.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGATGGCATGAAAAGGGGG
R:
TCTTCAGCTCAAACATGGCCT
Band lengths:
112-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: