MmuALTA0006158-3/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000036893 | Ehmt1
Description
euchromatic histone methyltransferase 1 [Source:MGI Symbol;Acc:MGI:1924933]
Coordinates
chr2:24863893-24877626:-
Coord C1 exon
chr2:24877455-24877626
Coord A exon
chr2:24863906-24863929
Coord C2 exon
chr2:24863893-24863905
Length
24 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
CTTTGACTTTTTTTTTTTAGCTT
3' ss Score
9.57
Exon sequences
Seq C1 exon
CATGCAGCCAGCAAAGACCATAGAGAAGTTCAAGACCATAAGGAACCAAAAGAGGATATCAACAGAAACATTTCTGAATGTGGACGACAGCAGCTTTTACCAACCTTCCCAGCCCTCCACCAGTCGCTACCTCAGAATCAGTGCTACATGGCCACCACAAAGTCCCAGACAG
Seq A exon
CTTGCTTGCCTTTTGTTTTAGCAG
Seq C2 exon
CTGCAGTATCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036893-15-15,15-14,15-12-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.895 A=NA C2=0.561
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types