RnoALTA0013382-3/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000007242 | Ehmt1
Description
euchromatic histone lysine methyltransferase 1 [Source:RGD Symbol;Acc:1307588]
Coordinates
chr3:2037520-2051180:-
Coord C1 exon
chr3:2051009-2051180
Coord A exon
chr3:2037654-2037677
Coord C2 exon
chr3:2037520-2037653
Length
24 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATC
5' ss Score
6.99
3' ss Seq
TTGACTTTTTTTTTTTTTAGCTT
3' ss Score
9.92
Exon sequences
Seq C1 exon
CACGCAGCCAGTAAAGACCATAGAGAAGTTCAAGACCATAAGGAACCAAAAGAGGATATCAACAGAAACATTTCTGAATGTGGACGACAGCAGCTTTTACCAACTTTCCCAGCCCTCCACCAGTCGCTACCTCAGAATCAATGCTACATGGCCACCACAAAGTCCCAGACAG
Seq A exon
CTTGCTTGCCTTTTGTTTTAGCAG
Seq C2 exon
CTGCAGTGTCTCGGAAGAAAAAACGAAGAATGGGAACCTATAGCTTAGTTCCCAAGAAAAAGACCAAAGTATTAAAGCAGAGGACGGTGATTGAGATGTTTAAAAGCATCACTCATTCCACTGTGGGTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007242-9-13,9-12,9-11-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.952 A=NA C2=0.629
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCACAAAGTCCCAGACAG
R:
TCTCAATCACCGTCCTCTGCT
Band lengths:
117-141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]