MmuALTA0006634-1/5 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000011831 | Evi5
Description
ecotropic viral integration site 5 [Source:MGI Symbol;Acc:MGI:104736]
Coordinates
chr5:107872630-107875107:-
Coord C1 exon
chr5:107874989-107875107
Coord A exon
NA
Coord C2 exon
chr5:107872630-107872655
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
GCGATGCTCCTGTCTTACAGTCA
3' ss Score
7.45
Exon sequences
Seq C1 exon
AAACACTCCCTATGAGTCAGCTGTAAATTCAATTCAAATCCCCAGTCTCCTAGTCTCCTCCTCTCATCATGGTTACCACCAAAATGACTGCTGCCTTTAGAAACCCTAATAGGAGACAG
Seq A exon
NA
Seq C2 exon
TCAGTGGATACGGTGAAGGAAAAGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000011831-0-6,0-5,0-4,0-3,0-2-1/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.950 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCAGTCTCCTAGTCTCCT
R:
TTCCTTCACCGTATCCACTGA
Band lengths:
102-122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types