MmuEX0017494 @ mm10
Exon Skipping
Gene
ENSMUSG00000011831 | Evi5
Description
ecotropic viral integration site 5 [Source:MGI Symbol;Acc:MGI:104736]
Coordinates
chr5:107842071-107875107:-
Coord C1 exon
chr5:107874989-107875107
Coord A exon
chr5:107872601-107872655
Coord C2 exon
chr5:107842071-107842300
Length
55 bp
Sequences
Splice sites
3' ss Seq
GCGATGCTCCTGTCTTACAGTCA
3' ss Score
7.45
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
Exon sequences
Seq C1 exon
AAACACTCCCTATGAGTCAGCTGTAAATTCAATTCAAATCCCCAGTCTCCTAGTCTCCTCCTCTCATCATGGTTACCACCAAAATGACTGCTGCCTTTAGAAACCCTAATAGGAGACAG
Seq A exon
TCAGTGGATACGGTGAAGGAAAAGTCCTGAGCGTGAAGCCATTTTTAGAACCCCG
Seq C2 exon
GTGGCGACAGACAAGGTGGCAGAAAAGCTGAGTTCTACTCTCTCATGGGTGAAGAACACAGTATCGCATACAGTCAGTCAGATGGCCAGTCAGGTGGCAAGTCCATCTGCCTCACTACACACTACATCCTCATCTACCACACTGTCAACACCAACACAGTCACCATCTTCCCCATCAAAGTTGAGTCCAGACGACTTAGAACTCCTGGCTAAGCTGGAGGAACAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000011831_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.950 A=1.000 C2=0.685
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCAAAATGACTGCTGCCT
R:
ACTGGCCATCTGACTGACTGT
Band lengths:
134-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types