MmuALTA0007237-2/5 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000014778 | Fhod1
Description
formin homology 2 domain containing 1 [Source:MGI Symbol;Acc:MGI:2679008]
Coordinates
chr8:105331129-105331489:-
Coord C1 exon
chr8:105331370-105331489
Coord A exon
chr8:105331189-105331285
Coord C2 exon
chr8:105331129-105331188
Length
97 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
ACAGGGTCCTTTCAGAGCAGTGG
3' ss Score
-2.5
Exon sequences
Seq C1 exon
GAAATTGCAGAGCCACTGTTTGATCTGAAAGTGGGCATGGAACAGCTGGTACACAATGCCACCTTCCGCTGTATTCTGGCTACCCTTTTGGCTGTGGGCAACTTCCTCAATGGTTCCCAG
Seq A exon
TGGCTTTGAGCTGAGCTACCTGGAGAAGGTGTCAGAAGTGAAGGACACAGTGCGACGGCAGTCATTGCTCTATCATCTCTGCTCCCTGGTGCTCCAG
Seq C2 exon
ACCCGACCTGATTCCTCTGACCTCTACTCAGAAATTCCTGCCCTCACCCGCTGTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000014778-26-35,26-34,26-33,26-32,26-31-2/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(10.5=100)
A:
NA
C2:
PF0218118=FH2=FE(14.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGCCACTGTTTGATCTGA
R:
GGGTGAGGGCAGGAATTTCTG
Band lengths:
162-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types