RnoALTA0015425-2/4 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000054625 | Fhod1
Description
formin homology 2 domain containing 1 [Source:RGD Symbol;Acc:1589776]
Coordinates
chr19:37287070-37287430:-
Coord C1 exon
chr19:37287311-37287430
Coord A exon
chr19:37287130-37287226
Coord C2 exon
chr19:37287070-37287129
Length
97 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
ACAGGGTCCTTTCAGAGCAGTGG
3' ss Score
-2.5
Exon sequences
Seq C1 exon
GAAATTGCAGAGCCACTGTTTGATCTGAAAGTGGGCATGGAACAGTTGGTGCACAATGCCACCTTCCGTTGCATTCTGGCTACCCTTTTGGCTGTGGGCAACTTCCTCAATGGCTCCCAG
Seq A exon
TGGCTTTGAGCTGAGCTACCTGGAGAAGGTGTCAGAAGTAAAGGACACAGTGCGCCGGCAGTCACTGCTGTATCATCTCTGTTCCCTGGTGCTCCAG
Seq C2 exon
ACCCGACCTGATTCCTCTGACCTCTACTCAGAAATTCCTGCCCTCACCCGCTGTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054625-23-40,23-39,23-38,23-37-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(10.5=100)
A:
NA
C2:
PF0218118=FH2=FE(14.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGCCACTGTTTGATCTGA
R:
GGGTGAGGGCAGGAATTTCTG
Band lengths:
162-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]